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    "mathead",
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    "writeMeltedChromosomalMatrixToDisk"
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        "chr1_22000001_23000000",
        "chr1_23000001_24000000",
        "chr1_24000001_25000000"
      ],
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      "table": true,
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      "title": "Calculate the probability distribution of CNV concordance events with a fast kernel",
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    },
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      "title": "Create a linear regression matrix.",
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      "title": "Create chromosomal interaction matrices for CNVScope shiny application.",
      "topics": [
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    },
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      "title": "List of Divisors",
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      "title": "Rescale positive and negative data, preserving sign information.",
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      "page": "extractNegLogPval",
      "title": "Find the negative log p-value of a pair of vectors.",
      "topics": [
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    },
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      "page": "formSampleMatrixFromRawGDCData",
      "title": "Form sample matrix from GDC copy number data files.",
      "topics": [
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    {
      "page": "freadGDCfile",
      "title": "Read GDC segmentation datafile for low-pass sequencing data.",
      "topics": [
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    },
    {
      "page": "getAnnotationMatrix",
      "title": "Get the genes in the genomic ranges indicated by the row and column labels.",
      "topics": [
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    },
    {
      "page": "getAsymmetricBlockIndices",
      "title": "Get Block Indices from an asymmetric (or symmetric) matrix.",
      "topics": [
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    },
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      "page": "getBlockAverageMatrixFromBreakpoints",
      "title": "Calculate block averages and areas in a matrix given breakpoints.",
      "topics": [
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    },
    {
      "page": "getGlobalRescalingStats",
      "title": "Calculate several base statistics for color rescaling.",
      "topics": [
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    },
    {
      "page": "getInterchromosomalInteractivePlot",
      "title": "Create an HTML widget for use in shiny or webshot for a given pair of chromosomes.",
      "topics": [
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    {
      "page": "GRanges_to_underscored_pos",
      "title": "Convert GRanges object to underscord positions.",
      "topics": [
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      ]
    },
    {
      "page": "importBreakpointBed",
      "title": "Import a breakpoint BED file.",
      "topics": [
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      ]
    },
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      "page": "mathead",
      "title": "Gets a small piece of a matrix (top left corner) for viewing, rather than pulling the first n rows.",
      "topics": [
        "mathead"
      ]
    },
    {
      "page": "nbl_result_matrix_sign_small",
      "title": "Neuroblastoma sample CNV relationship matrix",
      "topics": [
        "nbl_result_matrix_sign_small"
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    },
    {
      "page": "postProcessLinRegMatrix",
      "title": "Postprocess linear regression matrix.",
      "topics": [
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    },
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      "title": "Assign GenomicInteractions to a predefined series of bins for row and column, corresponding to a genomic matrix.",
      "topics": [
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    {
      "page": "runCNVScopeLocal",
      "title": "Runs the CNVScope plotly shiny application.",
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      "title": "Write a matrix, with genes, of a submatrix of a whole genome interaction matrix to disk.",
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