Package: CNVScope Type: Package Title: A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization Version: 3.7.4 Date: 2026-06-09 Authors@R: c(person(given = "James", family = "Dalgleish", role = c("aut", "cre"), email = "james.dalgleish@keble.ox.ac.uk"), person(given = "Yonghong", family = "Wang", role = "aut"), person(given = "Jack", family = "Zhu", role = "aut"), person(given = "Paul", family = "Meltzer", role = c("aut","sad") )) BugReports: https://github.com/jamesdalg/CNVScope/issues/ Depends: R (>= 4.1.0),ggplot2 Imports: tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach, GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats, plyr,data.table,dplyr, doParallel,stringr,rtracklayer Suggests: knitr, remotes,pwr,ComplexHeatmap,rmarkdown, igraph,visNetwork,circlize,plotly, InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm, shinythemes,shinycssloaders,DT,logging,heatmaply, S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets, GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie VignetteBuilder: knitr URL: https://github.com/jamesdalg/CNVScope/ biocViews: Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps. License: BSD_3_clause + file LICENSE RoxygenNote: 7.1.2 LazyData: true Config/pak/sysreqs: cmake libfftw3-dev libglpk-dev make libbz2-dev libicu-dev libjpeg-dev liblzma-dev libpng-dev libtiff-dev libuv1-dev libxml2-dev libssl-dev xz-utils zlib1g-dev Repository: https://jamesdalg.r-universe.dev Date/Publication: 2026-06-09 00:12:20 UTC RemoteUrl: https://github.com/jamesdalg/cnvscope RemoteRef: HEAD RemoteSha: 31f70f3d401c45b31499bee3afcf62d2cc3eb11e NeedsCompilation: no Packaged: 2026-06-09 03:49:23 UTC; root Author: James Dalgleish [aut, cre], Yonghong Wang [aut], Jack Zhu [aut], Paul Meltzer [aut, sad] Maintainer: James Dalgleish