Package: CNVScope
Type: Package
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
        Analysis and Visualization
Version: 3.7.8
Date: 2026-09-10
Authors@R: c(person(given = "James", family = "Dalgleish",
                    role = c("aut", "cre"), email = "jamesdalg@gmail.com",
                    comment = c("Alternate contact: james.dalgleish@keble.ox.ac.uk")),
             person(given = "Yonghong", family = "Wang", role = "aut"),
             person(given = "Jack", family = "Zhu", role = "aut"),
             person(given = "Paul", family = "Meltzer", role = c("aut","sad") ))
BugReports: https://github.com/jamesdalg/CNVScope/issues/
Depends: R (>= 4.1.0),ggplot2
Imports: tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
        Matrix,OpenImageR,matrixStats, plyr,data.table,dplyr,
        doParallel,stringr,rtracklayer
Suggests: knitr, remotes,pwr,ComplexHeatmap,rmarkdown,
        igraph,visNetwork,circlize,plotly, biomaRt,GenomicInteractions,
        InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
        shinythemes,shinycssloaders,DT,logging,heatmaply,
        S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
        GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie
VignetteBuilder: knitr
URL: https://github.com/jamesdalg/CNVScope/
biocViews:
Description: Provides the ability to create interaction maps, discover
        CNV map domains (edges), gene annotate interactions, and create
        interactive visualizations of these CNV interaction maps.
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
LazyData: true
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libfftw3-dev make libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libtiff-dev libuv1-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://jamesdalg.r-universe.dev
Date/Publication: 2026-09-10 18:58:22 UTC
RemoteUrl: https://github.com/jamesdalg/cnvscope
RemoteRef: HEAD
RemoteSha: 6f3fa32b9c80beeaf1ba6d6391262be1995df23c
NeedsCompilation: no
Packaged: 2026-10-11 15:31:19 UTC; root
Author: James Dalgleish [aut, cre] (Alternate contact:
    james.dalgleish@keble.ox.ac.uk),
  Yonghong Wang [aut],
  Jack Zhu [aut],
  Paul Meltzer [aut, sad]
Maintainer: James Dalgleish <jamesdalg@gmail.com>